PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4DS_F05CBDEB6.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 703aa    MW: 82102.3 Da    PI: 8.5549
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4DS_F05CBDEB6.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1804.3e-2520114191
                   FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkek.dgkwevtklele 84 
                            +fYn+YA e GFsvrks+ +    n+ i+ r+ vCs++g+re+++ k   ++++rr+r+ tr+gC+akl++++++ +g+w v+++  e
  Traes_4DS_F05CBDEB6.1  20 EFYNKYALEKGFSVRKSYVEWDGSNKYIILRKIVCSRQGFREDKHMKrkmEDRKRRPRSLTRVGCNAKLVITRQEeTGRWFVKDFIDE 107
                            6******************************************999888889999*******************99************ PP

                   FAR1  85 HnHelap 91 
                            H+H+lap
  Traes_4DS_F05CBDEB6.1 108 HSHPLAP 114
                            ****986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.1E-2320114IPR004330FAR1 DNA binding domain
PfamPF105511.2E-35235329IPR018289MULE transposase domain
PROSITE profilePS5096610.076513552IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 703 aa     Download sequence    Send to blast
MFEYLNVVSK MFDSEAEGYE FYNKYALEKG FSVRKSYVEW DGSNKYIILR KIVCSRQGFR  60
EDKHMKRKME DRKRRPRSLT RVGCNAKLVI TRQEETGRWF VKDFIDEHSH PLAPRDLSCL  120
LRSHRRISDE QKADIADMEK CGIRKYRIMD ILCFQYGGFD KVGCIKRDIY NFCHANKQET  180
ISAGDANTVI MHMMARRERD VDFFFKYLVD EHGHLKGLFW ADSQSRLDYE AFGDVIVFDS  240
TYRTNKYNLP FVPFVGLNHH RSTVIFGCGI ISHETSQAYE WMLRTFSDCM AQKHPISVIT  300
DGDLAMQRAI RVVWPDSNHR LCIWHIQQNI VRHLHDDDVK EEFRSFIYDT SSIEEHEIXW  360
IXFLQRNKVT SEESWLHQMY QMRKLWCAPY LEGRCFLGLS SNQRSESLNS VLHTHLEGKM  420
SLFEMLEHYE RCLASRRINE ALHDVEALQS VPFTEENASP LEKHAATVFT PSVFKMVLWS  480
IDAVSKCQIR EILDGSEDST YVVSKQERMD KKFGVRIEEQ GGLLHRVSCS CRKLECAGTP  540
CSHIFYILGI LKQTILPSCC VPTRWTMNAK CAYAPTRKNQ MYDYSVSLQR YRELRNCSHA  600
ASFKACHSDE DYHRLKMLLE AQHHGKQSSF EQADSKESTN AQHNSIRFGP LMPHSEKVDK  660
VLDPVHVPGR GAPKKRLQAK TKKSRSQNMC GYCKNPGHNR RKC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17075DRKRRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010231784.20.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLW5ETR80.0W5ETR8_WHEAT; Uncharacterized protein
STRINGBRADI2G37795.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-97FAR1-related sequence 5
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]